can't shutdown embedded eXist in JOnAS

>
> We're having some problems with the embedded exist database when  
> deploying
> Orbeon in JOnAS (Tomcat works OK for the same application).
>
> When undeploying the ear containing Orbeon, there are a bunch of  
> errors, and
> it looks like exist DB fails to shutdown properly. When starting the  
> ear
> again, Orbeon won't work as exist-conf.xml can't be found. Once in  
> this
> state, the app server needs to be shutdown and JOnAS's work directly
> manually deleleted before the ear will deploy & function again.
>
> Has anyone successfully used Orbeon under JOnAS since eXist was  
> introduced?
>
> 28 Jan 2009 16:41:50,101 [INFO ] Ear cForms-5.1.6.1322.module no  
> longer
> available.
> 28 Jan 2009 16:41:51,398 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load
> commons-logging.properties.  The eventual following stack trace is  
> caused by
> an error thrown for debugging purposes as well as to attempt to  
> terminate
> the thread which caused the illegal access, and has no functional  
> impact.
> 28 Jan 2009 16:41:51,398 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load
> META-INF/services/org.apache.commons.logging.LogFactory.  The eventual
> following stack trace is caused by an error thrown for debugging  
> purposes as
> well as to attempt to terminate the thread which caused the illegal  
> access,
> and has no functional impact.
> 28 Jan 2009 16:41:51,398 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load  
> org.apache.log4j.Logger.
> The eventual following stack trace is caused by an error thrown for
> debugging purposes as well as to attempt to terminate the thread which
> caused the illegal access, and has no functional impact.
> java.lang.IllegalStateException
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1245)
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1205)
>        at
> org.apache.commons.logging.impl.LogFactoryImpl
> $1.run(LogFactoryImpl.java:441)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.loadClass(LogFactoryImpl.java:
> 435)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.isLog4JAvailable(LogFactoryImpl.java:505)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogClassName(LogFactoryImpl.java:327)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogConstructor(LogFactoryImpl.java:
> 368)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:
> 529)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 235)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 209)
>        at  
> org.apache.commons.logging.LogFactory.getLog(LogFactory.java:351)
>        at org.quartz.core.JobRunShell.<init>(JobRunShell.java:80)
>        at
> org
> .quartz
> .impl
> .StdJobRunShellFactory.borrowJobRunShell(StdJobRunShellFactory.java:
> 86)
>        at
> org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:
> 357)
> 28 Jan 2009 16:41:51,398 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load
> org.apache.commons.logging.impl.Log4JLogger.  The eventual following  
> stack
> trace is caused by an error thrown for debugging purposes as well as  
> to
> attempt to terminate the thread which caused the illegal access, and  
> has no
> functional impact.
> java.lang.IllegalStateException
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1245)
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1205)
>        at
> org.apache.commons.logging.impl.LogFactoryImpl
> $1.run(LogFactoryImpl.java:441)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.loadClass(LogFactoryImpl.java:
> 435)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.isLog4JAvailable(LogFactoryImpl.java:506)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogClassName(LogFactoryImpl.java:327)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogConstructor(LogFactoryImpl.java:
> 368)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:
> 529)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 235)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 209)
>        at  
> org.apache.commons.logging.LogFactory.getLog(LogFactory.java:351)
>        at org.quartz.core.JobRunShell.<init>(JobRunShell.java:80)
>        at
> org
> .quartz
> .impl
> .StdJobRunShellFactory.borrowJobRunShell(StdJobRunShellFactory.java:
> 86)
>        at
> org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:
> 357)
> 28 Jan 2009 16:41:51,398 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load  
> java.util.logging.Logger.
> The eventual following stack trace is caused by an error thrown for
> debugging purposes as well as to attempt to terminate the thread which
> caused the illegal access, and has no functional impact.
> java.lang.IllegalStateException
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1245)
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1205)
>        at
> org.apache.commons.logging.impl.LogFactoryImpl
> $1.run(LogFactoryImpl.java:441)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.loadClass(LogFactoryImpl.java:
> 435)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.isJdk14Available(LogFactoryImpl.java:486)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogClassName(LogFactoryImpl.java:331)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogConstructor(LogFactoryImpl.java:
> 368)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:
> 529)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 235)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 209)
>        at  
> org.apache.commons.logging.LogFactory.getLog(LogFactory.java:351)
>        at org.quartz.core.JobRunShell.<init>(JobRunShell.java:80)
>        at
> org
> .quartz
> .impl
> .StdJobRunShellFactory.borrowJobRunShell(StdJobRunShellFactory.java:
> 86)
>        at
> org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:
> 357)
> 28 Jan 2009 16:41:51,398 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load
> org.apache.commons.logging.impl.Jdk14Logger.  The eventual following  
> stack
> trace is caused by an error thrown for debugging purposes as well as  
> to
> attempt to terminate the thread which caused the illegal access, and  
> has no
> functional impact.
> java.lang.IllegalStateException
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1245)
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1205)
>        at
> org.apache.commons.logging.impl.LogFactoryImpl
> $1.run(LogFactoryImpl.java:441)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.loadClass(LogFactoryImpl.java:
> 435)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.isJdk14Available(LogFactoryImpl.java:487)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogClassName(LogFactoryImpl.java:331)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogConstructor(LogFactoryImpl.java:
> 368)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:
> 529)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 235)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 209)
>        at  
> org.apache.commons.logging.LogFactory.getLog(LogFactory.java:351)
>        at org.quartz.core.JobRunShell.<init>(JobRunShell.java:80)
>        at
> org
> .quartz
> .impl
> .StdJobRunShellFactory.borrowJobRunShell(StdJobRunShellFactory.java:
> 86)
>        at
> org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:
> 357)
> 28 Jan 2009 16:41:51,413 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load  
> java.lang.Throwable.  The
> eventual following stack trace is caused by an error thrown for  
> debugging
> purposes as well as to attempt to terminate the thread which caused  
> the
> illegal access, and has no functional impact.
> java.lang.IllegalStateException
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1245)
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1205)
>        at
> org.apache.commons.logging.impl.LogFactoryImpl
> $1.run(LogFactoryImpl.java:441)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.loadClass(LogFactoryImpl.java:
> 435)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.isJdk14Available(LogFactoryImpl.java:488)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogClassName(LogFactoryImpl.java:331)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogConstructor(LogFactoryImpl.java:
> 368)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:
> 529)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 235)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 209)
>        at  
> org.apache.commons.logging.LogFactory.getLog(LogFactory.java:351)
>        at org.quartz.core.JobRunShell.<init>(JobRunShell.java:80)
>        at
> org
> .quartz
> .impl
> .StdJobRunShellFactory.borrowJobRunShell(StdJobRunShellFactory.java:
> 86)
>        at
> org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:
> 357)
> 28 Jan 2009 16:41:51,413 [INFO ] Illegal access: this web application
> instance has been stopped already.  Could not load
> org.apache.commons.logging.impl.Jdk14Logger.  The eventual following  
> stack
> trace is caused by an error thrown for debugging purposes as well as  
> to
> attempt to terminate the thread which caused the illegal access, and  
> has no
> functional impact.
> java.lang.IllegalStateException
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1245)
>        at
> org
> .apache
> .catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:
> 1205)
>        at
> org.apache.commons.logging.impl.LogFactoryImpl
> $1.run(LogFactoryImpl.java:441)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.loadClass(LogFactoryImpl.java:
> 435)
>        at
> org
> .apache
> .commons
> .logging.impl.LogFactoryImpl.getLogConstructor(LogFactoryImpl.java:
> 376)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.newInstance(LogFactoryImpl.java:
> 529)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 235)
>        at
> org
> .apache
> .commons.logging.impl.LogFactoryImpl.getInstance(LogFactoryImpl.java:
> 209)
>        at  
> org.apache.commons.logging.LogFactory.getLog(LogFactory.java:351)
>        at org.quartz.core.JobRunShell.<init>(JobRunShell.java:80)
>        at
> org
> .quartz
> .impl
> .StdJobRunShellFactory.borrowJobRunShell(StdJobRunShellFactory.java:
> 86)
>        at
> org.quartz.core.QuartzSchedulerThread.run(QuartzSchedulerThread.java:
> 357)
> 28 Jan 2009 16:41:58,867 [ERROR] Error undeploying module
> 'cForms-5.1.6.1322'.
> java.lang.reflect.UndeclaredThrowableException
>        at $Proxy1.undeployEAR(Unknown Source)
>        at
> com
> .orchestral
> .deployer.deployment.ModuleDeployer.undeploy(ModuleDeployer.java:132)
>        at
> com
> .orchestral
> .deployer
> .deployment.DeploymentService.undeployModule(DeploymentService.java:
> 260)
>        at
> com.orchestral.deployer.deployment.DeploymentService.access
> $700(DeploymentService.java:170)
>        at
> com.orchestral.deployer.deployment.DeploymentService
> $3.run(DeploymentService.java:1)
>        at
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:
> 441)
>        at
> java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
>        at java.util.concurrent.FutureTask.run(FutureTask.java:138)
>        at
> java.util.concurrent.ThreadPoolExecutor
> $Worker.runTask(ThreadPoolExecutor.java:885)
>        at
> java.util.concurrent.ThreadPoolExecutor
> $Worker.run(ThreadPoolExecutor.java:907)
>        at java.lang.Thread.run(Thread.java:619)
> Caused by: javax.management.MBeanException:
> com.orchestral.platform.api.UndeployException: Error undeploying
> 'C:\work\OrionOnline-Stable\work
> \cForms-5.1.6.1322\cForms-5.1.6.1322.module'.
>        at
> com
> .sun
> .jmx
> .mbeanserver
> .MBeanIntrospector
> .unwrapInvocationTargetException(MBeanIntrospector.java:283)
>        at
> com
> .sun
> .jmx.mbeanserver.MBeanIntrospector.invokeM(MBeanIntrospector.java:210)
>        at
> com.sun.jmx.mbeanserver.PerInterface.invoke(PerInterface.java:120)
>        at
> com.sun.jmx.mbeanserver.MBeanSupport.invoke(MBeanSupport.java:262)
>        at
> com
> .sun
> .jmx
> .interceptor
> .DefaultMBeanServerInterceptor
> .invoke(DefaultMBeanServerInterceptor.java:836)
>        at
> com.sun.jmx.mbeanserver.JmxMBeanServer.invoke(JmxMBeanServer.java:761)
>        at
> com.orchestral.jmx.MBeanServerHelper.invoke(MBeanServerHelper.java:32)
>        at
> com
> .orchestral
> .jmx.MBeanInvocationHandler.invokeMBean(MBeanInvocationHandler.java:2)
>        at
> com
> .orchestral
> .jmx.MBeanInvocationHandler.invoke(MBeanInvocationHandler.java:1)
>        ... 11 more
> Caused by: com.orchestral.platform.api.UndeployException: Error  
> undeploying
> 'C:\work\OrionOnline-Stable\work
> \cForms-5.1.6.1322\cForms-5.1.6.1322.module'.
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.undeployEAR(JonasPlatform.java:81)
>        at
> com.orchestral.platform.api.Platform.undeployEAR(Platform.java:29)
>        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>        at
> sun
> .reflect
> .NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>        at
> sun
> .reflect
> .DelegatingMethodAccessorImpl
> .invoke(DelegatingMethodAccessorImpl.java:25)
>        at java.lang.reflect.Method.invoke(Method.java:597)
>        at
> com
> .sun
> .jmx
> .mbeanserver
> .StandardMBeanIntrospector.invokeM2(StandardMBeanIntrospector.java:93)
>        at
> com
> .sun
> .jmx
> .mbeanserver
> .StandardMBeanIntrospector.invokeM2(StandardMBeanIntrospector.java:27)
>        at
> com
> .sun
> .jmx.mbeanserver.MBeanIntrospector.invokeM(MBeanIntrospector.java:208)
>        ... 18 more
> Caused by: java.io.IOException: Unable to delete file
> 'C:\work\OrionOnline-Stable\jonas-base\work\webapps\jonas\ear
> \cForms-5.1.6.1322\forms\WEB-INF\exist-data\0000000000.log'.
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.delete(JonasPlatform.java:71)
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.delete(JonasPlatform.java:80)
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.delete(JonasPlatform.java:80)
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.delete(JonasPlatform.java:80)
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.delete(JonasPlatform.java:80)
>        at
> com
> .orchestral
> .platform
> .platforms.JonasPlatform.deleteWorkingDirectories(JonasPlatform.java:
> 4)
>        at
> com
> .orchestral
> .platform.platforms.JonasPlatform.undeployEAR(JonasPlatform.java:88)
>        ... 26 more
>
> --
> View this message in context: http://www.nabble.com/can%27t-shutdown-embedded-eXist-in-JOnAS-tp21719962p21719962.html
> Sent from the ObjectWeb OPS - Users mailing list archive at  
> Nabble.com.
>
>
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